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* mathematica: Sqrt -> sqrt for C code generatorEugeniy Mikhailov2012-11-161-1/+4
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* xmds: insert proper equations from mathematica where rt --> rt2Eugeniy Mikhailov2012-11-161-2/+2
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* Mathematica: typo fix rt ---> rt2Eugeniy Mikhailov2012-11-161-1/+2
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* Added arguments to give magnetic field projection in Larmor frequency unitsEugeniy Mikhailov2012-11-161-4/+4
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* added proper rho elements into the density matrix elementEugeniy Mikhailov2012-11-151-1/+1
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* fixed typo in propagation equation generator: removed unwanted _a subindexEugeniy Mikhailov2012-11-151-8/+19
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* fields definitions are placedEugeniy Mikhailov2012-11-151-0/+641
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* Allow arbitrary B-field direction.Simon Rochester2012-10-211-340/+183
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* New version, RbXMDSSetup1.nb, with arbitrary sigma_+/- components for all ↵Simon Rochester2012-10-171-0/+2972
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* added code from newly regenerated mathematica->xmds filesEugeniy Mikhailov2012-09-281-113/+93
| | | | | * the main change is presense of the header and footer lines which allows to easily remove add this code at the right amount
* changed comment line in the generated xmds code to conform to xmds/xml syntaxEugeniy Mikhailov2012-09-281-6/+20
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* Added list of DM variables to output, and comments at the beginning and end ↵Simon Rochester2012-09-271-77/+160
| | | | of each text file.
* updated test cases since we use new etas separated for each transitionEugeniy Mikhailov2012-09-262-242/+56
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* use of mathematica generated etas normalized to the atomic densityEugeniy Mikhailov2012-09-261-18/+8
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* removed code related to unused density_matrix_averaged vectorEugeniy Mikhailov2012-09-261-112/+0
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* Replace Ec with conj(E) for E1,E2,E3,E4Eugeniy Mikhailov2012-09-261-41/+32
| | | | * this reduces the amount of hand introduced code
* dRho/dt uses conj(E) instead of EcEugeniy Mikhailov2012-09-261-5/+13
| | | | | | * this simplifies the logic in xmds, since otherwise I have to manually add Ec=conj(E) for appropriate fields. * This might be a bit slower in computation but should be fine
* Added definitions of etas, and modified propagation equation creation so ↵Simon Rochester2012-09-251-40/+53
| | | | that it will work regardless of the order of the states.
* fix typos in commentsEugeniy Mikhailov2012-09-251-2/+2
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* Changes in XMDS code generation.Simon Rochester2012-09-251-38/+16
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* added constants definition for C code with "const double"Eugeniy Mikhailov2012-09-251-5/+13
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* removed 'complex' in the C code for rho initializationEugeniy Mikhailov2012-09-251-2322/+2327
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* Modified tests callEugeniy Mikhailov2012-09-252-612/+5
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* added test case to the main xmds fileEugeniy Mikhailov2012-09-251-0/+6
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* updated test suite file according to new Mathematica definitionsEugeniy Mikhailov2012-09-251-102/+47
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* heavy use of Hermitian properties in dRho/dt calculationsEugeniy Mikhailov2012-09-251-86/+50
| | | | * also read constants from mathematica generated files
* added test files for simulationsEugeniy Mikhailov2012-09-255-0/+1719
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* Merge branch 'master' of qo.physics.wm.edu:NresonancesEugeniy Mikhailov2012-09-251-268/+224
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| * Remove conjugate DM variables from generated equations.Simon Rochester2012-09-251-268/+224
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* | Fixed dE/dz equations according to the latest Mathematica fileEugeniy Mikhailov2012-09-241-6/+6
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* Another bug fix in propagation generation code in RbXMDSSetup.nb.Simon Rochester2012-09-241-120/+258
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* Merge branch 'master' of qo.physics.wm.edu:NresonancesSimon Rochester2012-09-215-29/+139
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| * Merge branch 'fix_gain'Eugeniy Mikhailov2012-09-211-4/+4
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| | * added imaginary one to propagation equation into the polarizationEugeniy Mikhailov2012-09-201-4/+4
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| * | Merge branch 'master' of qo.physics.wm.edu:NresonancesEugeniy Mikhailov2012-09-211-10/+10
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| * | reflect new xmds file name in MakefilesEugeniy Mikhailov2012-09-202-25/+19
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| * | changed printed figures command to match new octaveEugeniy Mikhailov2012-09-201-0/+99
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| * | added some notes aboit optimization performanceEugeniy Mikhailov2012-09-061-0/+17
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* | | Fix bug in C code generation (2nd try).Simon Rochester2012-09-211-7/+5
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* | Fix bug in C code generation in RbXMDSSetup.nb.Simon Rochester2012-09-201-10/+10
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* Merge branch 'master' of qo.physics.wm.edu:NresonancesSimon Rochester2012-08-310-0/+0
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| * Merge branch 'master' of qo.physics.wm.edu:NresonancesEugeniy Mikhailov2012-08-271-21856/+194
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| * | revert deletion and merge of this file with wrong branchEugeniy Mikhailov2012-08-271-0/+642
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| * | delete some previous attempts of realistic RbEugeniy Mikhailov2012-08-271-642/+0
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* | | Fixed problem with steady-state observables definition, and added population ↵Simon Rochester2012-08-311-29/+192
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* | Updates to RbXMDSSetup.nb.Simon Rochester2012-08-211-21856/+194
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* First draft of realistic Rb which compiles and runsEugeniy Mikhailov2012-08-211-112/+243
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* changed some substitution to better match our XMDSEugeniy Mikhailov2012-08-216-500/+6998
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* Add magnetic field to RbXMDSSetup.nb.Simon Rochester2012-08-121-634/+908
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* Documentation and updates on RbXMDSSetup.nbSimon Rochester2012-08-121-4144/+11822
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