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-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/Nlevels_no_dopler_with_z_4wm.xmds4
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/Makefile11
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/README18
l---------xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/plot_fields_propagation_I4.gp1
l---------[-rw-r--r--]xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/pp_I2.m68
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I2.gp2
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I4.gp15
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m63
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/Makefile56
l---------xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/map2dat.m1
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/plot_fields_propagation_I2.gp15
-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/pp_I2.m68
12 files changed, 228 insertions, 94 deletions
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/Nlevels_no_dopler_with_z_4wm.xmds b/xmds2/Nlevels_no_dopler_with_z_4wm/Nlevels_no_dopler_with_z_4wm.xmds
index 44b13f7..5102c46 100644
--- a/xmds2/Nlevels_no_dopler_with_z_4wm/Nlevels_no_dopler_with_z_4wm.xmds
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/Nlevels_no_dopler_with_z_4wm.xmds
@@ -112,7 +112,7 @@
<geometry>
<propagation_dimension> z </propagation_dimension>
<transverse_dimensions>
- <dimension name="t" lattice="1000" domain="(-14.0e-7, 4.0e-7)" />
+ <dimension name="t" lattice="1000" domain="(-0.2e-6, 0.4e-6)" />
</transverse_dimensions>
</geometry>
@@ -310,7 +310,7 @@
</group>
<group>
- <sampling basis="t(100)" initial_sample="yes">
+ <sampling basis="t(1000)" initial_sample="yes">
<dependencies>density_matrix</dependencies>
<moments>
r11_out r22_out r33_out r44_out
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/Makefile b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/Makefile
index 697fd27..9c65fd6 100644
--- a/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/Makefile
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/Makefile
@@ -9,11 +9,16 @@ GNUPLOT_FILES = $(wildcard *.gp)
XSIL2GRAPHICS = xsil2graphics
# fast light
-# PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=1.9e7 --E2o=3.1e5 --E3o=3.8e7 --E4o=6.3e4
+PARAMS = \
+ --Ndens=1e15 \
+ --Lcell=10.0e-2 \
+ --Temperature=1e-9 \
+ --delta1=0 --delta2=0 --delta3=0 \
+ --E1o=1.9e7 --E2o=3.1e5 --E3o=3.8e7 --E4o=0
+
+
# slow light EIT
#PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=1.9e7 --E2o=3.1e5 --E3o=0 --E4o=0
-#Fast light to Slow light switch
-PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=2e7 --E2o=3e3 --E3o=6e6 --E4o=3e3
all: $(XSIL_FILES) Nlevels_no_dopler_with_z_4wm.xsil $(M_FILES) plot png
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/README b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/README
new file mode 100644
index 0000000..ec7d200
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/README
@@ -0,0 +1,18 @@
+fast to slow transition
+PARAMS = \
+ --Ndens=1e15 \
+ --Lcell=10.0e-2 \
+ --Temperature=1e-9 \
+ --delta1=0 --delta2=0 --delta3=0 \
+ --E1o=1.9e7 --E2o=3.1e5 --E3o=3.8e7 --E4o=0
+
+1.5 cm seems to give largest advance
+2.5 cm gives zero delay
+10cm slow light again
+
+fast light with decay in 1.5 cm cell
+PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=1.9e7 --E2o=3.1e5 --E3o=3.8e7 --E4o=0
+
+
+PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=3.0e7 --E2o=3.1e5 --E3o=3.0e7 --E4o=6.3e3
+10 cm first fast light then around 8 cm transition to slow light
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/plot_fields_propagation_I4.gp b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/plot_fields_propagation_I4.gp
new file mode 120000
index 0000000..134a380
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/plot_fields_propagation_I4.gp
@@ -0,0 +1 @@
+../plot_fields_propagation_I4.gp \ No newline at end of file
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/pp_I2.m b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/pp_I2.m
index 73487e0..4a1ed9b 100644..120000
--- a/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/pp_I2.m
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/fast_to_slow_switch/pp_I2.m
@@ -1,67 +1 @@
-Nlevels_no_dopler_with_z_4wm
-
-%% field propagation
-z_1=z_1*100; % z in cm
-t_1=t_1*1e6; % time now measured in uS
-figure(1)
-set(gca,'fontsize',20);
-imagesc(z_1, t_1, I2_out_1); colorbar
-xlabel('z (cm)')
-ylabel('t (uS)')
-zlabel('I_2')
-title('I_2')
-
-xskip=1;
-yskip=10;
-map2dat('I2.dat',z_1,t_1, I2_out_1, xskip, yskip);
-
-
-
-print('-color','fields_propagation_I2.eps')
-
-
-
-%% fields before and after the cell
-figure(2)
-%set(gca,'fontsize',30);
-plot( ...
- t_1,I2_out_1(:,1),'.-;before;', "linewidth", 4, ...
- t_1,I2_out_1(:,end), '-;after;', "linewidth", 4 ...
- )
-xlabel('t (uS)')
-ylabel('I_2 (1/s)^2')
-title('I_2 before and after cell')
-legend('location', 'southwest');
-
-[b, a]=butter(3, 0.05);
-I2_out_after=I2_out_1(:,end);
-I2_out_after_filtered=filtfilt(b,a,I2_out_after);
-settling_time=0.8; %uS
-t_good_indx=t_1> min(t_1 + settling_time);
-[m,max_pos_before]=max(I2_out_1(t_good_indx,1) ); [m,max_pos_after]=max(I2_out_after_filtered(t_good_indx));
-delay_time=t_1(max_pos_after)-t_1(max_pos_before);
-printf('Second field delay time = %f uS\n',delay_time);
-
-%set(gca,'fontsize',40);
-set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
-print('-color','fields_before_after_cell_I2.eps')
-
-figure(4)
-I2_max_in=max(I2_out_1(t_good_indx,1));
-I2_max_out=max(I2_out_1(t_good_indx,end));
-I2_in_norm=(I2_out_1(:,1))/I2_max_in;
-I2_out_norm=(I2_out_1(:,end))/I2_max_out;
-tmin=-0.05;
-tmax=0.05;
-indx=(t_1>=tmin & t_1<=tmax); % soom in in time to this region
-plot( ...
- t_1(indx),I2_in_norm(indx),'.-;before;', "linewidth", 4, ...
- t_1(indx),I2_out_norm(indx), '-;after;', "linewidth", 4 ...
- )
-xlim([tmin,tmax],'manual');
-xlabel('t (uS)')
-ylabel('I_2')
-title('I_2 before and after cell normalized')
-set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
-print('-color','probe_before_after_cell_I2_normalized.eps')
-
+../pp_I2.m \ No newline at end of file
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I2.gp b/xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I2.gp
index b6721d4..77b4870 100644
--- a/xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I2.gp
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I2.gp
@@ -12,4 +12,4 @@ set ylabel "t ({/Symbol m}S)"
set zlabel "I_2 (1/S)"
set nokey
#set view map
-splot [0:1.5][-0.4:0.4] 'I2.dat'
+splot [0:][-0.2:0.2] 'I2.dat'
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I4.gp b/xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I4.gp
new file mode 100644
index 0000000..3849e2f
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/plot_fields_propagation_I4.gp
@@ -0,0 +1,15 @@
+set terminal postscript portrait enhanced color solid size 5,3.5
+set output 'fields_propagation_I4.eps'
+set dgrid3d 100,100 qnorm 4
+set pm3d map
+#set contour
+set hidden3d
+set palette rgb 10,13,31 negative
+
+
+set xlabel "z (cm)"
+set ylabel "t ({/Symbol m}S)"
+set zlabel "I_2 (1/S)"
+set nokey
+#set view map
+splot [0:][-0.2:0.2] 'I4.dat'
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m b/xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m
index 45d4913..ea75b38 100644
--- a/xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m
@@ -1,6 +1,6 @@
-Nlevels_no_dopler_with_z_4wm
+Nlevels_no_dopler_with_z_4wm;
-%% field propagation
+%% field I2 propagation
z_1=z_1*100; % z in cm
t_1=t_1*1e6; % time now measured in uS
figure(1)
@@ -13,33 +13,50 @@ xlabel('z (cm)')
ylabel('t (uS)')
zlabel('I_2')
title('I_2')
+print('-color','-depsc2', '-tight', '-S200,120', 'fields_propagation_I2.eps')
-xskip=1;
-yskip=10;
-%map2dat('I2.dat',z_1,t_1, I2_out_1, xskip, yskip);
+desired_x_size=200;
+desired_y_size=200;
+xskip=ceil(length(z_1)/desired_x_size);
+yskip=ceil(length(t_1)/desired_y_size);
+map2dat('I2.dat',z_1,t_1, I2_out_1, xskip, yskip);
+%% field I4 propagation
+figure(2)
+
+imagesc(z_1, t_1, I4_out_1); colorbar
+tmin=-0.4;
+tmax= 0.4;
+ylim([tmin,tmax],'manual');
+xlabel('z (cm)')
+ylabel('t (uS)')
+zlabel('I_2')
+title('I_2')
+print('-color','-depsc2', '-tight', '-S200,120', 'fields_propagation_I4.eps')
+map2dat('I4.dat',z_1,t_1, I4_out_1, xskip, yskip);
+
-print('-color','-depsc2', '-tight', '-S200,120', 'fields_propagation_I2.eps')
%% fields before and after the cell
-figure(2)
+figure(3)
%set(gca,'fontsize',30);
plot( ...
- t_1,I2_out_1(:,1),'.-;before;', "linewidth", 4, ...
- t_1,I2_out_1(:,end), '-;after;', "linewidth", 4 ...
+ t_1,I2_out_1(:,1),'.-;I_2 before;', "linewidth", 4 ...
+ ,t_1,I2_out_1(:,end), '-;I_2 after;', "linewidth", 4 ...
+ ,t_1,I4_out_1(:,end), '-;I_4 after;', "linewidth", 4 ...
)
xlabel('t (uS)')
-ylabel('I_2 (1/s)^2')
-title('I_2 before and after cell')
-legend('location', 'southwest');
+ylabel('I (1/s)^2')
+title('Fields before and after cell')
+legend('location', 'northeast');
[b, a]=butter(3, 0.05);
I2_out_after=I2_out_1(:,end);
I2_out_after_filtered=filtfilt(b,a,I2_out_after);
-settling_time=0.8; %uS
+settling_time=0.01; %uS
t_good_indx=t_1> min(t_1 + settling_time);
[m,max_pos_before]=max(I2_out_1(t_good_indx,1) ); [m,max_pos_after]=max(I2_out_after_filtered(t_good_indx));
delay_time=t_1(max_pos_after)-t_1(max_pos_before);
@@ -47,25 +64,29 @@ printf('Second field delay time = %f uS\n',delay_time);
%set(gca,'fontsize',40);
%set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
-print('-color','-depsc2', '-tight','-S200,120', 'fields_before_after_cell_I2.eps')
+print('-color','-depsc2', '-tight','-S200,120', 'fields_before_after_cell.eps')
figure(4)
I2_max_in=max(I2_out_1(t_good_indx,1));
I2_max_out=max(I2_out_1(t_good_indx,end));
+I4_max_out=max(I4_out_1(t_good_indx,end));
I2_in_norm=(I2_out_1(:,1))/I2_max_in;
I2_out_norm=(I2_out_1(:,end))/I2_max_out;
-tmin=-0.05;
-tmax=0.05;
+I4_out_norm=(I4_out_1(:,end))/I4_max_out;
+tmin=-.05;
+tmax=.05;
indx=(t_1>=tmin & t_1<=tmax); % soom in in time to this region
plot( ...
- t_1(indx),I2_in_norm(indx),'.-;before;', "linewidth", 4, ...
- t_1(indx),I2_out_norm(indx), '-;after;', "linewidth", 4 ...
+ t_1(indx),I2_in_norm(indx),'.-;I_2 before;', "linewidth", 4, ...
+ t_1(indx),I2_out_norm(indx), '-;I_2 after;', "linewidth", 4 ...
+ ,t_1(indx),I4_out_norm(indx), '-;I_4 after;', "linewidth", 4 ...
)
legend('location', 'southeast');
xlim([tmin,tmax],'manual');
+ylim([0.5,1],'manual');
xlabel('t (uS)')
-ylabel('I_2')
-title('I_2 before and after cell normalized')
+ylabel('I normalized')
+title('Fields before and after cell normalized')
%set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
-print('-color','-depsc2', '-tight','-S200,120', 'probe_before_after_cell_I2_normalized.eps')
+print('-color','-depsc2', '-tight','-S200,120', 'fields_before_after_cell_normalized.eps')
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/Makefile b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/Makefile
new file mode 100644
index 0000000..95ebb0a
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/Makefile
@@ -0,0 +1,56 @@
+### -*- make -*-
+### This makefile can be used to build and run the XMDS examples
+
+
+XSIL_FILES = Nlevels_no_dopler_with_z_4wm.xsil
+M_FILES = $(patsubst %.xsil,%.m,$(XSIL_FILES))
+GNUPLOT_FILES = $(wildcard *.gp)
+
+XSIL2GRAPHICS = xsil2graphics
+
+# fast light
+# PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=1.9e7 --E2o=3.1e5 --E3o=3.8e7 --E4o=6.3e4
+# slow light EIT
+#PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=1.9e7 --E2o=3.1e5 --E3o=0 --E4o=0
+#Fast light to Slow light switch
+PARAMS = --delta1=0 --delta2=0 --delta3=0 --E1o=2e7 --E2o=3e3 --E3o=6e6 --E4o=3e2
+
+all: $(XSIL_FILES) Nlevels_no_dopler_with_z_4wm.xsil $(M_FILES) plot png
+
+Nlevels_no_dopler_with_z_4wm.xsil: ../Nlevels_no_dopler_with_z_4wm.run
+ $< $(PARAMS) | grep "Time elapsed for simulation is:" > exact_analysis_execution_time.txt
+
+%.m: %.xsil
+ $(XSIL2GRAPHICS) $<
+
+plot: $(M_FILES) $(GNUPLOT_FILES)
+ octave pp_I2.m
+ gnuplot plot_fields_propagation_I2.gp
+
+clean:
+ rm -f $(CC_FILES) $(RUN_FILES) $(M_FILES) $(XSIL_FILES) *.wisdom.fftw3 *.dat octave-core *.wisdom *.pdf
+ rm -f $(pdf_targets)
+ rm -f $(eps_targets)
+
+real_clean: clean
+ rm -f $(png_targets)
+
+eps_targets = $(wildcard *.eps)
+pdf_targets = $(eps_targets:%.eps=%.pdf)
+png_targets = $(pdf_targets:%.pdf=%.png)
+
+pdf: $(pdf_targets)
+
+$(pdf_targets): %.pdf : %.eps
+ cat $< | ps2eps -B > __tt.eps
+ epspdf __tt.eps $@
+ rm -f __tt.eps
+ #ps2eps -B $< | epspdf $< $@
+
+png: pdf $(png_targets)
+
+$(png_targets): %.png : %.pdf
+ convert -density 300 $< $@
+
+.PRECIOUS: %.run %.xsil %.m
+.PHONY: all clean
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/map2dat.m b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/map2dat.m
new file mode 120000
index 0000000..14fae30
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/map2dat.m
@@ -0,0 +1 @@
+../map2dat.m \ No newline at end of file
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/plot_fields_propagation_I2.gp b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/plot_fields_propagation_I2.gp
new file mode 100644
index 0000000..a0cd31f
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/plot_fields_propagation_I2.gp
@@ -0,0 +1,15 @@
+set terminal postscript portrait enhanced color solid size 5,3.5
+set output 'fields_propagation_I2.eps'
+set dgrid3d 100,100 qnorm 4
+set pm3d map
+#set contour
+set hidden3d
+set palette rgb 10,13,31 negative
+
+
+set xlabel "z (cm)"
+set ylabel "t ({/Symbol m}S)"
+set zlabel "I_2 (1/S)"
+set nokey
+#set view map
+splot [0:][-0.2:0.4] 'I2.dat'
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/pp_I2.m b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/pp_I2.m
new file mode 100644
index 0000000..ecfdbbb
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/pulse_split/pp_I2.m
@@ -0,0 +1,68 @@
+Nlevels_no_dopler_with_z_4wm
+
+%% field propagation
+z_1=z_1*100; % z in cm
+t_1=t_1*1e6; % time now measured in uS
+figure(1)
+set(gca,'fontsize',20);
+imagesc(z_1, t_1, I2_out_1); colorbar
+xlabel('z (cm)')
+ylabel('t (uS)')
+zlabel('I_2')
+title('I_2')
+
+xskip=1;
+yskip=10;
+map2dat('I2.dat',z_1,t_1, I2_out_1, xskip, yskip);
+
+
+
+print('-color','fields_propagation_I2.eps')
+
+
+
+%% fields before and after the cell
+figure(2)
+%set(gca,'fontsize',30);
+plot( ...
+ t_1,I2_out_1(:,1),'.-;before;', "linewidth", 4, ...
+ t_1,I2_out_1(:,end), '-;after;', "linewidth", 4 ...
+ )
+xlabel('t (uS)')
+ylabel('I_2 (1/s)^2')
+title('I_2 before and after cell')
+legend('location', 'northeast');
+
+[b, a]=butter(3, 0.05);
+I2_out_after=I2_out_1(:,end);
+I2_out_after_filtered=filtfilt(b,a,I2_out_after);
+settling_time=0.01; %uS
+t_good_indx=t_1> min(t_1 + settling_time);
+[m,max_pos_before]=max(I2_out_1(t_good_indx,1) ); [m,max_pos_after]=max(I2_out_after_filtered(t_good_indx));
+delay_time=t_1(max_pos_after)-t_1(max_pos_before);
+printf('Second field delay time = %f uS\n',delay_time);
+
+%set(gca,'fontsize',40);
+set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
+print('-color','fields_before_after_cell_I2.eps')
+
+figure(4)
+I2_max_in=max(I2_out_1(t_good_indx,1));
+I2_max_out=max(I2_out_1(t_good_indx,end));
+I2_in_norm=(I2_out_1(:,1))/I2_max_in;
+I2_out_norm=(I2_out_1(:,end))/I2_max_out;
+tmin=-0.05;
+tmax=0.05;
+indx=(t_1>=tmin & t_1<=tmax); % soom in in time to this region
+plot( ...
+ t_1(indx),I2_in_norm(indx),'.-;before;', "linewidth", 4, ...
+ t_1(indx),I2_out_norm(indx), '-;after;', "linewidth", 4 ...
+ )
+xlim([tmin,tmax],'manual');
+xlabel('t (uS)')
+ylabel('I_2')
+title('I_2 before and after cell normalized')
+legend('location', 'northeast');
+set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
+print('-color','probe_before_after_cell_I2_normalized.eps')
+