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-rw-r--r--xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m60
1 files changed, 60 insertions, 0 deletions
diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m b/xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m
new file mode 100644
index 0000000..4f5d677
--- /dev/null
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm/pp_I2.m
@@ -0,0 +1,60 @@
+Nlevels_no_dopler_with_z_4wm
+
+%% field propagation
+z_1=z_1*100; % z in cm
+t_1=t_1*1e6; % time now measured in uS
+figure(1)
+set(gca,'fontsize',20);
+imagesc(z_1, t_1, I2_out_1); colorbar
+xlabel('z (cm)')
+ylabel('t (uS)')
+zlabel('I_2')
+title('I_2')
+
+print('-color','fields_propagation_I2.eps')
+
+
+
+%% fields before and after the cell
+figure(2)
+%set(gca,'fontsize',30);
+plot( ...
+ t_1,I2_out_1(:,1),'.-;before;', "linewidth", 4, ...
+ t_1,I2_out_1(:,end), '-;after;', "linewidth", 4 ...
+ )
+xlabel('t (uS)')
+ylabel('I_2 (1/s)^2')
+title('I_2 before and after cell')
+
+[b, a]=butter(3, 0.05);
+I2_out_after=I2_out_1(:,end);
+I2_out_after_filtered=filtfilt(b,a,I2_out_after);
+settling_time=0.8; %uS
+t_good_indx=t_1> min(t_1 + settling_time);
+[m,max_pos_before]=max(I2_out_1(t_good_indx,1) ); [m,max_pos_after]=max(I2_out_after_filtered(t_good_indx));
+delay_time=t_1(max_pos_after)-t_1(max_pos_before);
+printf('Second field delay time = %f uS\n',delay_time);
+
+%set(gca,'fontsize',40);
+set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
+print('-color','fields_before_after_cell_I2.eps')
+
+figure(4)
+I2_max_in=max(I2_out_1(t_good_indx,1));
+I2_max_out=max(I2_out_1(t_good_indx,end));
+I2_in_norm=(I2_out_1(:,1))/I2_max_in;
+I2_out_norm=(I2_out_1(:,end))/I2_max_out;
+tmin=-0.05;
+tmax=0.05;
+indx=(t_1>=tmin & t_1<=tmax); % soom in in time to this region
+plot( ...
+ t_1(indx),I2_in_norm(indx),'.-;before;', "linewidth", 4, ...
+ t_1(indx),I2_out_norm(indx), '-;after;', "linewidth", 4 ...
+ )
+xlim([tmin,tmax],'manual');
+xlabel('t (uS)')
+ylabel('I_2')
+title('I_2 before and after cell normalized')
+set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
+print('-color','probe_before_after_cell_I2_normalized.eps')
+