added field 4 output

1 files changed, 17 insertions, 11 deletions

diff --git a/xmds2/Nlevels_no_dopler_with_z_4wm_for_irina_pqe/fast_to_slow_switch/pp_I2.m b/xmds2/Nlevels_no_dopler_with_z_4wm_for_irina_pqe/fast_to_slow_switch/pp_I2.m
index 0d46ec7..9895fa0 100644
--- a/xmds2/Nlevels_no_dopler_with_z_4wm_for_irina_pqe/fast_to_slow_switch/pp_I2.m
+++ b/xmds2/Nlevels_no_dopler_with_z_4wm_for_irina_pqe/fast_to_slow_switch/pp_I2.m
@@ -14,8 +14,10 @@ ylabel('t (uS)')
 zlabel('I_2')
 title('I_2')
 
-xskip=1;
-yskip=10;
+desired_x_size=200;
+desired_y_size=200;
+xskip=ceil(length(z_1)/desired_x_size);
+yskip=ceil(length(t_1)/desired_y_size);
 map2dat('I2.dat',z_1,t_1, I2_out_1, xskip, yskip);
 
 
@@ -28,12 +30,13 @@ print('-color','-depsc2', '-tight', '-S200,120', 'fields_propagation_I2.eps')
 figure(2)
 %set(gca,'fontsize',30); 
 plot( ...
-	t_1,I2_out_1(:,1),'.-;before;', "linewidth", 4,  ...
-	t_1,I2_out_1(:,end), '-;after;', "linewidth", 4 ...
+	t_1,I2_out_1(:,1),'.-;I_2 before;', "linewidth", 4  ...
+	,t_1,I2_out_1(:,end), '-;I_2 after;', "linewidth", 4 ...
+	,t_1,I4_out_1(:,end), '-;I_4 after;', "linewidth", 4 ...
 	)
 xlabel('t (uS)')
-ylabel('I_2 (1/s)^2')
-title('I_2 before and after cell')
+ylabel('I (1/s)^2')
+title('Fields before and after cell')
 legend('location', 'northeast');
 
 [b, a]=butter(3, 0.05);
@@ -47,25 +50,28 @@ printf('Second field delay time  = %f uS\n',delay_time);
 
 %set(gca,'fontsize',40); 
 %set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
-print('-color','-depsc2', '-tight','-S200,120', 'fields_before_after_cell_I2.eps')
+print('-color','-depsc2', '-tight','-S200,120', 'fields_before_after_cell.eps')
 
 figure(4)
 I2_max_in=max(I2_out_1(t_good_indx,1));
 I2_max_out=max(I2_out_1(t_good_indx,end));
+I4_max_out=max(I4_out_1(t_good_indx,end));
 I2_in_norm=(I2_out_1(:,1))/I2_max_in;
 I2_out_norm=(I2_out_1(:,end))/I2_max_out;
+I4_out_norm=(I4_out_1(:,end))/I4_max_out;
 tmin=-.05;
 tmax=.05;
 indx=(t_1>=tmin & t_1<=tmax);  % soom in in time to this region
 plot( ...
-	t_1(indx),I2_in_norm(indx),'.-;before;', "linewidth", 4,  ...
-	t_1(indx),I2_out_norm(indx), '-;after;', "linewidth", 4 ...
+	t_1(indx),I2_in_norm(indx),'.-;I_2 before;', "linewidth", 4,  ...
+	t_1(indx),I2_out_norm(indx), '-;I_2 after;', "linewidth", 4 ...
+	,t_1(indx),I4_out_norm(indx), '-;I_4 after;', "linewidth", 4 ...
 	)
 legend('location', 'southeast');
 xlim([tmin,tmax],'manual');	
 xlabel('t (uS)')
 ylabel('I_2')
-title('I_2 before and after cell normalized')
+title('Fields before and after cell normalized')
 %set (gcf,'paperposition',[0.5 0 2.5,1.5]); % IMPORTANT to shrink eps size for readable fonts
-print('-color','-depsc2', '-tight','-S200,120', 'probe_before_after_cell_I2_normalized.eps')
+print('-color','-depsc2', '-tight','-S200,120', 'fields_before_after_cell_normalized.eps')