import pytest import qolab.tableflow as tblfl import pandas as pd def test_table_load_noinputs(): assert tblfl.loadInOutTables() == (None, None) assert tblfl.loadInOutTables( inputFileName=None, outputFileName="non_existing_file" ) == (None, None) def test_wrong_comment_in_table_file_to_load(): with pytest.raises(Exception): # should raise ParserError tblfl.loadInOutTables( inputFileName="tests/tableflow_test_data/tableIn1.csv", outputFileName=None, comment="%", ) def test_right_comment_in_table_file_to_load(): tIn, tOut = tblfl.loadInOutTables( inputFileName="tests/tableflow_test_data/tableIn1.csv", outputFileName=None, comment="#", ) assert type(tIn) == pd.core.frame.DataFrame def test_table_equality_with_no_output_file_name(): tIn, tOut = tblfl.loadInOutTables( inputFileName="tests/tableflow_test_data/tableIn1.csv", outputFileName=None, comment="#", ) assert type(tIn) == pd.core.frame.DataFrame assert type(tOut) == pd.core.frame.DataFrame assert tIn.equals(tOut) col0 = tIn.keys()[0] vBefore = tIn.at[0, col0] tIn.at[0, col0] = vBefore + 1 assert not tIn.equals(tOut) def test_table_load_with_in_out_file_names(): # different filenames, same content for ease of testing tIn, tOut = tblfl.loadInOutTables( inputFileName="tests/tableflow_test_data/tableIn1.csv", outputFileName="tests/tableflow_test_data/tableOut1nonProcessed.csv", comment="#", ) assert type(tIn) == pd.core.frame.DataFrame assert type(tOut) == pd.core.frame.DataFrame assert tIn.equals(tOut) # different filenames, different content tIn, tOut = tblfl.loadInOutTables( inputFileName="tests/tableflow_test_data/tableIn1.csv", outputFileName="tests/tableflow_test_data/tableOut1pariallyProcessed.csv", comment="#", ) assert type(tIn) == pd.core.frame.DataFrame assert type(tOut) == pd.core.frame.DataFrame assert not tIn.equals(tOut) assert "out1" in tOut.columns assert "out1" not in tIn.columns def test_for_existing_row(): tbl1 = pd.DataFrame({"a": [1, 2, 3], "b": [1, 4, 6]}) r = pd.Series({"a": 2, "b": 4}) assert tblfl.ilocRowOrAdd(tbl1, r) == 1 def test_for_existing_row_with_NA(): # NA in both table and raw should return a hit tbl1 = pd.DataFrame({"a": [1, 2, 3], "b": [1, pd.NA, 6]}) r = pd.Series({"a": 2, "b": pd.NA}) assert tblfl.ilocRowOrAdd(tbl1, r) == 1 # should insert new row tbl1 = pd.DataFrame({"a": [1, 2, 3], "b": [1, 4, 6]}) r = pd.Series({"a": 2, "b": pd.NA}) assert tblfl.ilocRowOrAdd(tbl1, r) == 3 # should insert new row tbl1 = pd.DataFrame({"a": [1, 2, 3], "b": [1, 4, 6]}) r = pd.Series({"a": 2, "b": pd.NA}) assert tblfl.ilocRowOrAdd(tbl1, r) == 3 def test_for_nonexisting_row_and_its_insertion(): tbl1 = pd.DataFrame({"a": [1, 2, 3], "b": [1, 4, 6]}) r = pd.Series({"a": 2, "b": 10}) assert len(tbl1) == 3 assert tblfl.ilocRowOrAdd(tbl1, r) == 3 assert len(tbl1) == 4 def test_isRedoNeeded(): r = pd.Series({"a": 2, "b": 4, "c": pd.NA}) assert not tblfl.isRedoNeeded(r, ["a", "b"]) assert tblfl.isRedoNeeded(r, ["c"]) assert tblfl.isRedoNeeded(r, ["non_existing"]) assert not tblfl.isRedoNeeded(r, ["b", "c"]) def test_reflowTable(): tIn, tOut = tblfl.loadInOutTables( inputFileName="tests/tableflow_test_data/tableIn1.csv", outputFileName="tests/tableflow_test_data/tableOut1pariallyProcessed.csv", comment="#", ) # check for warnings with pytest.warns(UserWarning): tblfl.reflowTable(tIn, tOut) with pytest.warns(UserWarning): tblfl.reflowTable(tIn, tOut, postProcessedColums=["dummyName"]) def frow(row): return row with pytest.warns(UserWarning): tblfl.reflowTable(tIn, tOut, process_row_func=frow) # now run reflow def frow(row, extraInfo=None): row["out1"] = row["x"] * row["x"] return row assert len(tIn) != len(tOut) tblfl.reflowTable( tIn, tOut, process_row_func=frow, postProcessedColums=["out1", "out2"] ) assert len(tIn) == len(tOut) assert (tOut["out1"] == tOut["x"] * tOut["x"]).all() # check that reflow is done tOut.loc[tOut["x"] == 1, "out1"] = pd.NA tblfl.reflowTable( tIn, tOut, process_row_func=frow, postProcessedColums=["out1", "out2"] ) assert (tOut["out1"] == tOut["x"] * tOut["x"]).all() # check that reflow is not reprocessed tOut.loc[tOut["x"] == 1, "out1"] = 12121 # crazy number tblfl.reflowTable( tIn, tOut, process_row_func=frow, postProcessedColums=["out1", "out2"] ) assert (tOut.loc[tOut["x"] == 1, "out1"] == 12121).all() # should not change # now we are forcing redo tOut.loc[tOut["x"] == 1, "out1"] = 12121 # crazy number tblfl.reflowTable( tIn, tOut, process_row_func=frow, postProcessedColums=["out1", "out2"], redo=True, ) assert not (tOut.loc[tOut["x"] == 1, "out1"] == 12121).all() # must not be the same assert (tOut["out1"] == tOut["x"] * tOut["x"]).all()