function [Energy, Waist, Penalty] = fitness( q_0, q_final, x_final, optics_positions, optics_focal_length, lambda ) %Outputs fitness of suggested solution x0 = 0; Np=20; % # of pts between start position and second lens N_collimated = 10; % # of pts between second lens and third lens to be collimated region x1=optics_positions(1); x2=optics_positions(2); x3=optics_positions(3); x_array1=linspace(x0,x2,Np); x_array2=linspace(x2, x3, N_collimated); x = cat(2,x_array1,x_array2); q_f_trial_forward = gbeam_propagation(x,q_0,x0,optics_placer(optics_positions, optics_focal_length)); [Waist_trial_forward, Radius_trial_forward] = q2wr(q_f_trial_forward, lambda); q_f_trial_backward = gbeam_propagation(x,q_final,x_final,optics_placer(optics_positions, optics_focal_length)); [Waist_trial_backward, Radius_trial_backward] = q2wr(q_f_trial_backward, lambda); Energy = 0; Penalty_waist_mismatch = sum(abs((Waist_trial_forward-Waist_trial_backward)./min(Waist_trial_forward, Waist_trial_backward)))/Np; Energy = 1e-2*Penalty_waist_mismatch; % penalty calculation % do not put lenses too close to each other and end positions lens_size=0.03; d(1)=abs(x1-x2); d(2)=abs(x2-x3); d(3)=abs(x1-x3); d_from_start=abs(x0-optics_positions); d_from_end=abs(x_final-optics_positions); d=cat(2, d, d_from_start, d_from_end); coef = 1; penalty_lenses_too_closely_spaced =coef*sum( exp(-(d/(lens_size)).^12) ); Energy = Energy + penalty_lenses_too_closely_spaced; % make sure that lenses are between ends d_from_start=(x0-optics_positions); d_from_end=(optics_positions-x_final); d = cat(2, d_from_start, d_from_end); coef = 1e-2; distance_scaling=100; penalty_lenses_outside_optical_path = coef * sum(1 + tanh(distance_scaling*d)); Energy = Energy + penalty_lenses_outside_optical_path; % make collimated region between 2nd and 3rd lens %intialize intermediate points between lenses q_intermediate = q_f_trial_forward((x2