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* plots labels improvedEugeniy Mikhailov2012-12-281-6/+6
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* plot quality improvedEugeniy Mikhailov2012-12-282-4/+29
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* save the number crunching command into the shell fileEugeniy Mikhailov2012-12-201-1/+3
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* added some parameters filesEugeniy Mikhailov2012-12-197-3/+47
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* added z dependence summary plotEugeniy Mikhailov2012-12-191-0/+70
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* better estimate of the pulse amplitude for fitEugeniy Mikhailov2012-12-191-1/+1
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* added new functions to extract delay timesEugeniy Mikhailov2012-12-112-0/+41
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* new set of parameter files demonstrating slow and fast light switchEugeniy Mikhailov2012-12-114-1/+35
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* added new test case using --gt argumentEugeniy Mikhailov2012-12-112-76/+89
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* moved ground level decay time to parametersEugeniy Mikhailov2012-12-111-4/+3
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* Merge branch 'circ_polarizations'Eugeniy Mikhailov2012-11-3020-106/+2115
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| * added post processing script and sample case parametersEugeniy Mikhailov2012-11-302-0/+92
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| * added target to copy mathematica filesEugeniy Mikhailov2012-11-291-0/+6
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| * added needed run_tests.py to the test dirEugeniy Mikhailov2012-11-281-0/+350
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| * added auxiliary makefilesEugeniy Mikhailov2012-11-283-0/+127
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| * completed move of mathematica generated files to includesEugeniy Mikhailov2012-11-283-11/+13
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| * typo in makefileEugeniy Mikhailov2012-11-282-8/+20
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| * mathematica generated files are used as includes nowEugeniy Mikhailov2012-11-285-173/+178
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| * Makefile test properly works with included to xmds filesEugeniy Mikhailov2012-11-281-3/+17
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| * now we use proper xml includes in xmds file for generated codeEugeniy Mikhailov2012-11-284-94/+107
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| * use headers files for testEugeniy Mikhailov2012-11-281-0/+67
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| * renamed content of the file to reflect file nameEugeniy Mikhailov2012-11-282-4/+4
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| * some mathematica generated files are now inserted via c++ #includeEugeniy Mikhailov2012-11-283-155/+163
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| * change Maxwell probability related vectors to static oneEugeniy Mikhailov2012-11-271-8/+8
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| * changed argument and variables name to a shorter versionEugeniy Mikhailov2012-11-271-21/+17
| | | | | | | | | | thanks to my bugreport and patch xmds can now handle multiple similar sounding arguments
| * git ci tests are addedEugeniy Mikhailov2012-11-272-0/+676
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| * Added proper output xsil file nameEugeniy Mikhailov2012-11-271-1/+1
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| * xmds: compilation problem fix Sqrt --> sqrt as generated by mathematicaEugeniy Mikhailov2012-11-161-81/+81
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| * xmds: insert proper equations from mathematica where rt --> rt2Eugeniy Mikhailov2012-11-161-2/+2
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| * Added arguments to give magnetic field projection in Larmor frequency unitsEugeniy Mikhailov2012-11-161-4/+4
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| * added proper rho elements into the density matrix elementEugeniy Mikhailov2012-11-151-1/+1
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| * fields definitions are placedEugeniy Mikhailov2012-11-151-0/+641
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* | move Maxwell distribution from computed vector to just a vectorEugeniy Mikhailov2012-11-271-8/+8
|/ | | | | | | | | | | | | Thanks to suggestion of Graham Dennis, this skip unnecessary calculations of the Maxwell probability distributions at every step since. Thus avoids recalculation. Below the original comment: Your computed_vector's "Maxwell_distribution_probabilities" and "Maxwell_distribution_probabilities_norm" are constant.  If you just change them to be <vector> elements changing the <evaluation> tags to <initialisation> tags, this will ensure that they are not evaluated every time they are needed.
* added code from newly regenerated mathematica->xmds filesEugeniy Mikhailov2012-09-281-113/+93
| | | | | * the main change is presense of the header and footer lines which allows to easily remove add this code at the right amount
* updated test cases since we use new etas separated for each transitionEugeniy Mikhailov2012-09-262-242/+56
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* use of mathematica generated etas normalized to the atomic densityEugeniy Mikhailov2012-09-261-18/+8
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* removed code related to unused density_matrix_averaged vectorEugeniy Mikhailov2012-09-261-112/+0
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* Replace Ec with conj(E) for E1,E2,E3,E4Eugeniy Mikhailov2012-09-261-41/+32
| | | | * this reduces the amount of hand introduced code
* fix typos in commentsEugeniy Mikhailov2012-09-251-2/+2
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* Modified tests callEugeniy Mikhailov2012-09-252-612/+5
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* added test case to the main xmds fileEugeniy Mikhailov2012-09-251-0/+6
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* updated test suite file according to new Mathematica definitionsEugeniy Mikhailov2012-09-251-102/+47
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* heavy use of Hermitian properties in dRho/dt calculationsEugeniy Mikhailov2012-09-251-86/+50
| | | | * also read constants from mathematica generated files
* added test files for simulationsEugeniy Mikhailov2012-09-255-0/+1719
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* Fixed dE/dz equations according to the latest Mathematica fileEugeniy Mikhailov2012-09-241-6/+6
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* added imaginary one to propagation equation into the polarizationEugeniy Mikhailov2012-09-201-4/+4
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* reflect new xmds file name in MakefilesEugeniy Mikhailov2012-09-202-25/+19
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* changed printed figures command to match new octaveEugeniy Mikhailov2012-09-201-0/+99
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* added some notes aboit optimization performanceEugeniy Mikhailov2012-09-061-0/+17
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* First draft of realistic Rb which compiles and runsEugeniy Mikhailov2012-08-211-112/+243
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